Browse Skills — Page 237

react-hooks

HoangNguyen0403/agent-skills-standard

Write efficient React functional components and hooks. Use when writing custom hooks, optimizing useEffect, or working with useMemo/useCallback in React.

react-hooks-composition

bobmatnyc/claude-mpm-skills

Advanced React hooks composition patterns - SWR integration, debounced search, memoized contexts, state machines, and performance optimization

react-hooks-patterns

TheBushidoCollective/han

Use when React Hooks patterns including useState, useEffect, useContext, useMemo, useCallback, and custom hooks. Use for modern React development.

react-modernization

wshobson/agents

Upgrade React applications to latest versions, migrate from class components to hooks, and adopt concurrent features. Use when modernizing React codebases, migrating to React Hooks, or upgrading to latest React versions.

react-modernization

benjaminasterA/antigravity-awesome-skills

Upgrade React applications to latest versions, migrate from class components to hooks, and adopt concurrent features. Use when modernizing React codebases, migrating to React Hooks, or upgrading to...

react-modernization-v2

diegosouzapw/awesome-omni-skills

React Modernization workflow skill. Use this skill when the user needs Master React version upgrades, class to hooks migration, concurrent features adoption, and codemods for automated transformation and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

react-native

vercel-labs/json-render

React Native renderer for json-render that turns JSON specs into native mobile UIs. Use when working with @json-render/react-native, building React Native UIs from JSON, creating mobile component catalogs, or rendering AI-generated specs on mobile.

react-native

jezweb/claude-skills

React Native and Expo patterns for building performant mobile apps. Covers list performance, animations with Reanimated, navigation, UI patterns, state management, platform-specific code, and Expo workflows. Use when building or reviewing React Native code. Triggers: 'react native', 'expo', 'mobile app', 'react native performance', 'flatlist', 'reanimated', 'expo router', 'mobile development', 'ios app', 'android app'.

react-native-architecture

HoangNguyen0403/agent-skills-standard

Structure React Native projects with feature-first organization and separation of concerns. Use when structuring a React Native project or applying clean architecture patterns.

react-native-architecture

wshobson/agents

Build production React Native apps with Expo, navigation, native modules, offline sync, and cross-platform patterns. Use when developing mobile apps, implementing native integrations, or architecting React Native projects.

react-native-architecture-v2

diegosouzapw/awesome-omni-skills

React Native Architecture workflow skill. Use this skill when the user needs Production-ready patterns for React Native development with Expo, including navigation, state management, native modules, and offline-first architecture and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

react-native-architecture-v3

diegosouzapw/awesome-omni-skills

React Native Architecture workflow skill. Use this skill when the user needs Production-ready patterns for React Native development with Expo, including navigation, state management, native modules, and offline-first architecture and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

react-native-architecture-v4

diegosouzapw/awesome-omni-skills

React Native Architecture workflow skill. Use this skill when the user needs Production-ready patterns for React Native development with Expo, including navigation, state management, native modules, and offline-first architecture and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

react-native-components

HoangNguyen0403/agent-skills-standard

Build modern React Native components using function components and composition. Use when building or refactoring React Native function components and composable UI.

react-native-deployment

HoangNguyen0403/agent-skills-standard

OTA updates with CodePush, EAS Build, and release configurations. Use when configuring OTA updates, EAS Build, or managing release configs for React Native.

react-native-design

wshobson/agents

Master React Native styling, navigation, and Reanimated animations for cross-platform mobile development. Use when building React Native apps, implementing navigation patterns, or creating performant animations.

react-native-dls

HoangNguyen0403/agent-skills-standard

Enforce design token usage in React Native. Use when enforcing a design system, preventing hardcoded styles, or implementing theme tokens in React Native.

react-native-expert

Jeffallan/claude-skills

Builds, optimizes, and debugs cross-platform mobile applications with React Native and Expo. Implements navigation hierarchies (tabs, stacks, drawers), configures native modules, optimizes FlatList rendering with memo and useCallback, and handles platform-specific code for iOS and Android. Use when building a React Native or Expo mobile app, setting up navigation, integrating native modules, improving scroll performance, handling SafeArea or keyboard input, or configuring Expo SDK projects.

react-native-mmkv

margelo/react-native-skills

Fast synchronous key-value storage for React Native via react-native-mmkv (Nitro-backed). Covers creating and configuring MMKV instances, reading/writing all value types (string, number, boolean, buffer), React hooks for reactive UI, value-change listeners, encryption, AsyncStorage migration, and state-management integrations (zustand, redux-persist, jotai, react-query). Also covers storage limits, multi-process mode, and the V4 upgrade from the class-based API.

react-native-native-modules

TheBushidoCollective/han

Use when building or integrating native modules in React Native. Covers creating native modules, Turbo Modules, bridging native code, and accessing platform-specific APIs.

react-native-navigation

HoangNguyen0403/agent-skills-standard

Set up navigation stacks and deep linking with React Navigation in React Native. Use when setting up navigation stacks or deep linking in React Native with React Navigation.

react-native-navigation-v6

HoangNguyen0403/agent-skills-standard

Configure React Navigation 6+ stacks, tabs, and deep linking for React Native. Use when implementing React Navigation stacks, tabs, or deep linking in React Native.

react-native-notifications

HoangNguyen0403/agent-skills-standard

Push notifications for React Native using Firebase or Expo Notifications. Use when integrating push notifications with Firebase or Expo in React Native.

react-native-performance

HoangNguyen0403/agent-skills-standard

Optimize React Native rendering for smooth 60fps mobile experiences. Use when optimizing React Native app performance, reducing re-renders, or fixing frame drops.

react-native-platform

TheBushidoCollective/han

Use when handling platform-specific code in React Native for iOS and Android. Covers Platform API, platform-specific components, native modules, and cross-platform best practices.

react-native-platform-specific

HoangNguyen0403/agent-skills-standard

Resolve iOS and Android differences using Platform API and native modules in React Native. Use when handling platform-specific behavior or integrating native modules in React Native.

react-native-project-creater

partme-ai/full-stack-skills

"Provides one-command project creation for React Native including project initialization, configuration, and template generation. Use when the user asks about creating React Native projects, needs to initialize a new React Native project, or generate React Native project structure."

react-native-reanimated

TerminalSkills/skills

>-

react-native-security

HoangNguyen0403/agent-skills-standard

Secure storage, network traffic, and deep links in React Native mobile apps. Use when implementing secure storage, certificate pinning, or deep link validation in React Native.

react-native-state-management

HoangNguyen0403/agent-skills-standard

Implement local and global state with Context, Zustand, and Redux Toolkit in React Native. Use when choosing or implementing state management in React Native with Context, Zustand, or Redux.

react-native-styling

HoangNguyen0403/agent-skills-standard

Style React Native apps with StyleSheet API, Flexbox, theming, and responsive design. Use when implementing React Native styles, theming, Flexbox layouts, or responsive design.

react-native-testing

HoangNguyen0403/agent-skills-standard

Test React Native components with Jest and React Native Testing Library. Use when writing Jest or React Native Testing Library tests for React Native components.

react-native-vision-camera

margelo/react-native-skills

Best-practices guide for react-native-vision-camera v5 (Nitro rewrite, April 2026) and migrating from v4. Use when installing, configuring, or writing code with the Camera, outputs, frame processors, recording, or barcode/depth/RAW features. Also use when converting v4 code (photo={true}, takePhoto, useCameraFormat, useFrameProcessor) to the new v5 API.

react-native-web-core

TheBushidoCollective/han

Use when working with React Native Web projects. Provides core concepts, components, and cross-platform patterns for building web applications with React Native.

react-native-web-navigation

TheBushidoCollective/han

Use when implementing navigation in React Native Web projects. Provides patterns for React Navigation, deep linking, and web-specific routing.

react-native-web-performance

TheBushidoCollective/han

Use when optimizing React Native Web performance. Provides patterns for code splitting, bundle optimization, memoization, and web-specific performance improvements.

react-native-web-styling

TheBushidoCollective/han

Use when styling React Native Web components. Provides patterns for StyleSheet API, platform-specific styles, responsive design, and theming.

react-native-web-testing

TheBushidoCollective/han

Use when testing React Native Web applications. Provides patterns for Jest, React Native Testing Library, component testing, and web-specific testing strategies.

react-nextjs-development

diegosouzapw/awesome-omni-skills

React/Next.js Development Workflow workflow skill. Use this skill when the user needs React and Next.js 14+ application development with App Router, Server Components, TypeScript, Tailwind CSS, and modern frontend patterns and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

react-nextjs-development-v2

diegosouzapw/awesome-omni-skills

React/Next.js Development Workflow workflow skill. Use this skill when the user needs React and Next.js 14+ application development with App Router, Server Components, TypeScript, Tailwind CSS, and modern frontend patterns and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

react-patterns

jezweb/claude-skills

React 19 performance patterns and composition architecture for Vite + Cloudflare projects. 50+ rules ranked by impact — eliminating waterfalls, bundle optimisation, re-render prevention, composition over boolean props, server/client boundaries, and React 19 APIs. Use when writing, reviewing, or refactoring React components. Triggers: 'react patterns', 'react review', 'react performance', 'optimise components', 'react best practices', 'composition patterns', 'why is it slow', 'reduce re-renders', 'fix waterfall'.

react-patterns-v2

diegosouzapw/awesome-omni-skills

React Patterns workflow skill. Use this skill when the user needs Modern React patterns and principles. Hooks, composition, performance, TypeScript best practices and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

react-patterns-v3

diegosouzapw/awesome-omni-skills

React Patterns workflow skill. Use this skill when the user needs Modern React patterns and principles. Hooks, composition, performance, TypeScript best practices and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

trailofbits/react-pdf

trailofbits/skills-curated

- Generating PDF documents (reports, invoices, resumes, forms, certificates) - Creating PDFs that need complex layouts (multi-column, grids, cards) - Building PDFs with inline SVG graphics, charts, or icons - Producing documents with custom Google Fonts or emoji - Any PDF task where flexbox layout is easier than absolute coordinate math

vercel-labs/react-pdf

vercel-labs/json-render

React PDF renderer for json-render. Use when generating PDF documents from JSON specs, working with @json-render/react-pdf, or rendering specs to PDF buffers/streams/files.

react-performance

HoangNguyen0403/agent-skills-standard

Optimize React rendering, bundle size, and data fetching performance. Use when optimizing React rendering performance, reducing re-renders, or improving bundle size.

react-router-code-review

existential-birds/beagle

Reviews React Router code for proper data loading, mutations, error handling, and navigation patterns. Use when reviewing React Router v6.4+ code, loaders, actions, or navigation logic.

react-router-v7

existential-birds/beagle

React Router v7 best practices for data-driven routing. Use when implementing routes, loaders, actions, Form components, fetchers, navigation guards, protected routes, or URL search params. Triggers on createBrowserRouter, RouterProvider, useLoaderData, useActionData, useFetcher, NavLink, Outlet.

react-scan

remotion-dev/remotion

Capture and analyze Remotion Studio React render profiles through development-only WebMCP tools. Use when diagnosing unnecessary re-renders, slow commits, frame-reactive component trees, or when comparing render performance before and after a change.

react-security

HoangNguyen0403/agent-skills-standard

Prevent XSS, secure auth flows, and harden React client-side applications. Use when preventing XSS, securing auth flows, or auditing third-party dependencies in React.

react-server-components-framework

yonatangross/orchestkit

Use when building Next.js 16+ apps with React Server Components. Covers App Router, Cache Components (replacing experimental_ppr), streaming SSR, Server Actions, and React 19 patterns for server-first architecture.

react-state-machine

bobmatnyc/claude-mpm-skills

Building reusable React state machine skills with XState v5 and the actor model

react-state-management

HoangNguyen0403/agent-skills-standard

Select and implement local, global, and server state patterns in React. Use when choosing or implementing state management (Context, Zustand, Redux, React Query) in React.

react-state-management

wshobson/agents

Master modern React state management with Redux Toolkit, Zustand, Jotai, and React Query. Use when setting up global state, managing server state, or choosing between state management solutions.

react-state-management-v2

diegosouzapw/awesome-omni-skills

React State Management workflow skill. Use this skill when the user needs Master modern React state management with Redux Toolkit, Zustand, Jotai, and React Query. Use when setting up global state, managing server state, or choosing between state management solutions and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

react-testing

HoangNguyen0403/agent-skills-standard

Test React components with RTL and Jest/Vitest. Use when writing React component tests with React Testing Library, Jest, or Vitest.

react-three-fiber

vercel-labs/json-render

React Three Fiber 3D renderer for json-render. Use when working with @json-render/react-three-fiber, building 3D scenes from JSON specs, rendering meshes/lights/models/environments, or integrating Three.js with json-render catalogs.

react-three-fiber

TerminalSkills/skills

>-

react-three-fiber-game

openai/plugins

Build React-hosted 3D browser games with React Three Fiber. Use when the user wants pmndrs-based scene composition, shared React state, and 3D HUD integration inside a React app.

react-tooling

HoangNguyen0403/agent-skills-standard

Configure debugging, bundle analysis, and ecosystem tools for React applications. Use when setting up Vite/webpack build tooling, analyzing bundle size, debugging re-renders with React DevTools, or configuring ESLint and StrictMode for React projects.

react-typescript

HoangNguyen0403/agent-skills-standard

Type React components and hooks with TypeScript patterns. Use when typing React props, hooks, event handlers, or component generics in TypeScript.

react-ui-patterns

benjaminasterA/antigravity-awesome-skills

Modern React UI patterns for loading states, error handling, and data fetching. Use when building UI components, handling async data, or managing UI states.

react-ui-patterns-v2

diegosouzapw/awesome-omni-skills

React UI Patterns workflow skill. Use this skill when the user needs Modern React UI patterns for loading states, error handling, and data fetching. Use when building UI components, handling async data, or managing UI states and the operator should preserve the upstream workflow, copied support files, and provenance before merging or handing off.

react-vendoring

vercel/next.js

>

react-vite-best-practices

supabase/kizuna

React and Vite performance optimization guidelines. Use when writing, reviewing, or optimizing React components built with Vite. Triggers on tasks involving Vite configuration, build optimization, code splitting, lazy loading, HMR, bundle size, or React performance.

react-vite-best-practices

AsyrafHussin/agent-skills

React and Vite performance optimization guidelines. Use when writing, reviewing, or optimizing React components built with Vite. Triggers on tasks involving Vite configuration, build optimization, code splitting, lazy loading, HMR, bundle size, or React performance.

react-vite-dashboard

google-labs-code/stitch-skills

Convert Stitch designs into production React + Vite dashboards with TanStack Query, accessible tokens from DESIGN.md, and Web3-ready patterns (ethers/viem).

react-web

alinaqi/maggy

React web development with hooks, React Query, Zustand

react18-batching-patterns

github/awesome-copilot

'Provides exact patterns for diagnosing and fixing automatic batching regressions in React 18 class components. Use this skill whenever a class component has multiple setState calls in an async method, inside setTimeout, inside a Promise .then() or .catch(), or in a native event handler. Use it before writing any flushSync call - the decision tree here prevents unnecessary flushSync overuse. Also use this skill when fixing test failures caused by intermediate state assertions that break after React 18 upgrade.'

react18-dep-compatibility

github/awesome-copilot

'React 18.3.1 and React 19 dependency compatibility matrix.'

react18-enzyme-to-rtl

github/awesome-copilot

'Provides exact Enzyme → React Testing Library migration patterns for React 18 upgrades. Use this skill whenever Enzyme tests need to be rewritten - shallow, mount, wrapper.find(), wrapper.simulate(), wrapper.prop(), wrapper.state(), wrapper.instance(), Enzyme configure/Adapter calls, or any test file that imports from enzyme. This skill covers the full API mapping and the philosophy shift from implementation testing to behavior testing. Always read this skill before rewriting Enzyme tests - do not translate Enzyme APIs 1:1, that produces brittle RTL tests.'

react18-legacy-context

github/awesome-copilot

'Provides the complete migration pattern for React legacy context API (contextTypes, childContextTypes, getChildContext) to the modern createContext API. Use this skill whenever migrating legacy context in class components - this is always a cross-file migration requiring the provider AND all consumers to be updated together. Use it before touching any contextTypes or childContextTypes code, because migrating only the provider without the consumers (or vice versa) will cause a runtime failure. Always read this skill before writing any context migration - the cross-file coordination steps here prevent the most common context migration bugs.'

react18-lifecycle-patterns

github/awesome-copilot

'Provides exact before/after migration patterns for the three unsafe class component lifecycle methods - componentWillMount, componentWillReceiveProps, and componentWillUpdate - targeting React 18.3.1. Use this skill whenever a class component needs its lifecycle methods migrated, when deciding between getDerivedStateFromProps vs componentDidUpdate, when adding getSnapshotBeforeUpdate, or when fixing React 18 UNSAFE_ lifecycle warnings. Always use this skill before writing any lifecycle migration code - do not guess the pattern from memory, the decision trees here prevent the most common migration mistakes.'

react18-string-refs

github/awesome-copilot

'Provides exact migration patterns for React string refs (ref="name" + this.refs.name) to React.createRef() in class components. Use this skill whenever migrating string ref usage - including single element refs, multiple refs in a component, refs in lists, callback refs, and refs passed to child components. Always use this skill before writing any ref migration code - the multiple-refs-in-list pattern is particularly tricky and this skill prevents the most common mistakes. Use it for React 18.3.1 migration (string refs warn) and React 19 migration (string refs removed).'

react19-concurrent-patterns

github/awesome-copilot

Preserve React 18 concurrent patterns and adopt React 19 APIs (useTransition, useDeferredValue, Suspense, use(), useOptimistic, Actions) during migration.

react19-source-patterns

github/awesome-copilot

'Reference for React 19 source-file migration patterns, including API changes, ref handling, and context updates.'

react19-test-patterns

github/awesome-copilot

Provides before/after patterns for migrating test files to React 19 compatibility, including act() imports, Simulate removal, and StrictMode call count changes.

reactflow-custom-nodes

TheBushidoCollective/han

Use when creating custom React Flow nodes, edges, and handles. Covers custom node components, resizable nodes, toolbars, and advanced customization.

reactflow-fundamentals

TheBushidoCollective/han

Use when building node-based UIs, flow diagrams, workflow editors, or interactive graphs with React Flow. Covers setup, nodes, edges, controls, and interactivity.

reactions-stoichiometry

Tibsfox/gsd-skill-creator

Balancing chemical equations, reaction classification, stoichiometric calculations, acid-base chemistry, oxidation-reduction (redox) reactions, and thermochemistry. Covers conservation of mass, mole ratios, limiting reagents, percent yield, Bronsted-Lowry and Lewis acid-base theory, pH calculations, oxidation states, half-reaction balancing, enthalpy, Hess's law, and calorimetry. Use when solving quantitative chemistry problems involving reactions, energy changes, or solution chemistry.

reactivate

anthropics/knowledge-work-plugins

Wins back customers who have quietly stopped buying — finds the ones whose gap has stretched past their own normal rhythm or who are showing churn signals, ranks them by what the relationship was worth, drafts a win-back message per customer in the owner's voice, and sends and logs only what the owner approves. Chains review-reputation, outreach-composer, and crm-autopilot, and keeps the rule that the first touch acknowledges the gap without pitching. Use this whenever the owner is worried about customers drifting away, including phrasings like "who hasn't ordered in a while," "win back my old customers," "which customers have gone quiet," "we lost some regulars," "reach out to the people who stopped calling," or "how do I get them back." Reach for it when the owner names a customer they have not heard from, as readily as for a full win-back campaign.

reactivation-specialist

aaron-he-zhu/aaron-marketing-skills

Use when the user asks to "build a win-back campaign", "re-engage lapsed subscribers", "run a re-permission / re-consent sweep", or "sunset my dead list"; produces a closed-loop reactivation program — a lapsed-cohort definition, a staged offer ladder, a re-consent (re-permission) capture step, and a sunset-confirm / suppression rule. Owns none of the SEND-N sub-item notes: engagement-decay / sunset is email-sequence-designer''s and preference-center / frequency options is preference-frequency-manager''s — this skill references those notes, it does not re-emit them. Not for the general lifecycle flows (welcome/cart/post-purchase) — use email-sequence-designer; not for the preference-center / opt-down ladder — use preference-frequency-manager; not for the consent record itself — use consent-registry; not for computing EQS or the N1 veto — use email-quality-auditor. 流失召回/重新授权/沉默用户清理

reactome-database

jaechang-hits/SciAgent-Skills

Query Reactome pathways via REST: pathway queries, entity lookup, keyword search, gene list enrichment, hierarchy, cross-refs. Content + Analysis services. Python wrapper: reactome2py. For KEGG use kegg-database; for PPIs use string-database-ppi.

reactome-skill

aipoch/medical-research-skills

Query the Reactome REST API for pathway content and enrichment analyses; use when you need curated pathway data, reaction details, or overrepresentation results for a gene list.

reactome-skill

openai/plugins

Submit compact Reactome ContentService requests for pathway, event, participant, search, and diagram-related data. Use when a user wants concise Reactome summaries

read-alignment-bowtie2-alignment

swaruplab/operon

Align short reads using Bowtie2 with local or end-to-end modes. Supports gapped alignment. Use when aligning ChIP-seq, ATAC-seq, or when flexible alignment modes are needed.

read-alignment-bwa-alignment

swaruplab/operon

Align DNA short reads to reference genomes using bwa-mem2, the faster successor to BWA-MEM. Use when aligning DNA short reads to a reference genome.

read-alignment-hisat2-alignment

swaruplab/operon

Align RNA-seq reads with HISAT2, a memory-efficient splice-aware aligner. Use when STAR's memory requirements are too high or for general RNA-seq alignment.

read-alignment-star-alignment

swaruplab/operon

Align RNA-seq reads with STAR (Spliced Transcripts Alignment to a Reference). Supports two-pass mode for novel splice junction discovery. Use when aligning RNA-seq data requiring splice-aware alignment.

read-book

coreyhaines31/makerskills

When you want to read and extract structured notes from a book — PDF, EPUB, MOBI, markdown, .txt, pasted text, or URL to a public-domain work. Reads in chunks (by chapter when a TOC exists, by 50-page blocks otherwise), extracts per-chapter TL;DR + key concepts + quotes + action items + frameworks, and offers to capture to second-brain raw/ as a highlights- file. Four modes — notes (default, chapter-by-chapter), summary (whole-book TL;DR + 3–5 takeaways), quotes (pull-quote highlights only), study (notes + Q&A spaced-rep prep). Triggers on "/read-book," "read this book," "extract notes from this PDF," "what's in this book," "summarize this ebook," "pull quotes from this." Sibling to watch-video (same content-consumption pattern, different medium).

read-eval-logs

UKGovernmentBEIS/inspect_evals

View and analyse Inspect evaluation log files using the Python API. Trigger whenever you need to look at a .eval file yourself without using pre-written scripts.

read-file

openakita/openakita

Read file content for text files. When you need to check file content, analyze code or data, or get configuration values.

read-only-ops

notque/vexjoy-agent

Read-only exploration, inspection, and reporting without modifications.

read-qc-adapter-trimming

swaruplab/operon

Remove sequencing adapters from FASTQ files using Cutadapt and Trimmomatic. Supports single-end and paired-end reads, Illumina TruSeq, Nextera, and custom adapter sequences. Use when FastQC shows adapter contamination or before alignment of short reads.

read-qc-contamination-screening

swaruplab/operon

Detect sample contamination and cross-species reads using FastQ Screen. Screen reads against multiple reference genomes to identify bacterial, viral, adapter, or sample swap contamination. Use when suspecting cross-contamination or working with samples prone to microbial contamination.

read-qc-fastp-workflow

swaruplab/operon

All-in-one read preprocessing with fastp including adapter trimming, quality filtering, deduplication, base correction, and HTML report generation. Use when preprocessing Illumina data and wanting a single fast tool instead of separate Cutadapt, Trimmomatic, and FastQC steps.

read-qc-quality-filtering

swaruplab/operon

Filter reads by quality scores, length, and N content using Trimmomatic and fastp. Apply sliding window trimming, remove low-quality bases from read ends, and discard reads below thresholds. Use when reads have poor quality tails or require minimum quality for downstream analysis.

read-qc-quality-reports

swaruplab/operon

Generate and interpret quality reports from FASTQ files using FastQC and MultiQC. Assess per-base quality, adapter content, GC bias, duplication levels, and overrepresented sequences. Use when performing initial QC on raw sequencing data or validating preprocessing results.

read-qc-umi-processing

swaruplab/operon

Extract, process, and deduplicate reads using Unique Molecular Identifiers (UMIs) with umi_tools. Use when library prep includes UMIs and accurate molecule counting is needed, such as in single-cell RNA-seq, low-input RNA-seq, or targeted sequencing to distinguish PCR from biological duplicates.

read-sequences

swaruplab/operon

Read biological sequence files (FASTA, FASTQ, GenBank, EMBL, ABI, SFF) using Biopython Bio.SeqIO. Use when parsing sequence files, iterating multi-sequence files, random access to large files, or high-performance parsing.