yoheinakajima.

build-paper

Build and audit a Distributed Discovery paper from source. Use when compiling foundations, upstream-extension, or study papers and validating generated tables, figures, citations, cross-references, and claim IDs.

run-study

Run or resume a registered Distributed Discovery study with immutable provenance. Use for executing study configurations, resuming bounded searches, or recording reproducible research runs in this repository.

update-upstream-patch

Regenerate additive Shared Discovery Paradox paper or site patches against the pinned read-only upstream commit. Use when preparing, refreshing, applying, or validating local upstream-extension patches without modifying or pushing upstream.

verify-claim

Audit one Distributed Discovery claim against its sources, proof, code, runs, and tests. Use when checking evidence, considering status promotion, or recording a failed verification.

prezograph

Creates and edits Prezograph graph-based presentations from source material or versioned JSON. Use when the user says “turn this into a Prezograph,” asks for a graph presentation, or needs shared entities, cross-scene connections, reveal order, validation, browser rendering, offline export, or current CLI guidance. Always emit inert .prezograph.json rather than executable HTML.