biological-function-mapping
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npx mdskill add yogsoth-ai/de-anthropocentric-research-engine/biological-function-mappingMaps technical functions to biological systems using a biologization pipeline
- Solves the task of translating technical problems into biological function needs
- Uses problem-biologization, organism-discovery, and functional-model-biology SOPs
- Identifies champion organisms across diverse phyla to model target functions
- Delivers functional models and biological insights for technical application
SKILL.md
.github/skills/biological-function-mappingView on GitHub ↗
--- name: biological-function-mapping description: "Map technical functions to biological systems. Orchestrates problem-biologization → organism-discovery → functional-model-biology." execution: tactic used-by: biomimicry, biologize-and-discover, functional-analogy, biotriz-resolution --- # Biological Function Mapping Map technical functions to biological systems via biologize→discover→model pipeline. ## Stages ### Stage 1: Problem Biologization Translate the technical problem into a biological function need statement using problem-biologization SOP. Frame in terms of what function nature must achieve, not how. ### Stage 2: Organism Discovery Search for organisms that solve the biologized problem using organism-discovery SOP. Identify champion organisms across multiple phyla/kingdoms for diversity. ### Stage 3: Functional Modeling For each promising organism, build a functional model (energy/matter/information flows) using functional-model-biology SOP. Identify the mechanism that achieves the target function. ## Minimum Yield | Metric | Floor | |--------|-------| | Biological function statements | ≥2 | | Organisms discovered | ≥5 | | Biological systems mapped to technical functions | ≥3 | | Functional models completed | ≥3 | ## Available SOPs | SOP | Role | |-----|------| | problem-biologization | Stage 1 — translate technical→biological | | organism-discovery | Stage 2 — find champion organisms | | functional-model-biology | Stage 3 — build functional models | | biological-strategy-extraction | Post — extract transferable strategies | | web-search | Support — search for biological solutions | | paper-overview | Support — find academic biology sources |
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