results-analysis
$
npx mdskill add Boom5426/Nature-Paper-Skills/results-analysisTransform raw experimental data into publication-ready results.
- Converts CSV, JSON, and TensorBoard logs into paper sections.
- Executes statistical tests to validate model performance claims.
- Generates figures and tables from evaluation outputs automatically.
- Delivers defensible claims with visualizations and text.
SKILL.md
.github/skills/results-analysisView on GitHub ↗
---
name: results-analysis
description: Use when analyzing experimental results, validating comparisons, generating paper-ready results text, or turning model-evaluation outputs into figures, tables, and defensible claims.
---
# Results Analysis for ML/AI Research
A systematic experimental results analysis workflow connecting experimental data to paper writing.
## Core Features
This skill provides three core capabilities:
1. **Experimental Data Analysis** - Read and analyze experimental data in various formats
2. **Statistical Validation** - Perform statistical significance tests and performance comparisons
3. **Paper Content Generation** - Generate text and visualizations for the Results section
## When to Use
Use this skill when you need to:
- Analyze experimental results (CSV, JSON, TensorBoard logs)
- Generate the Results section of a paper
- Compare performance across multiple models
- Perform statistical significance tests
- Create publication-quality visualizations
- Validate the reliability of experimental results
## Workflow
### Standard Analysis Pipeline
```
Data Loading → Data Validation → Statistical Analysis → Visualization → Writing → Quality Check
```
### Step 1: Data Loading and Validation
**Supported Data Formats:**
- CSV files - Tabular data
- JSON files - Structured results
- TensorBoard logs - Training curves
- Python pickle - Complex objects
**Data Validation Checks:**
- Completeness check - Missing values, outliers
- Consistency check - Data format, units
- Reproducibility check - Random seeds, version info
Select appropriate tools for data loading and preliminary validation based on data format.
### Step 2: Statistical Analysis
**Basic Statistics:**
- Mean
- Standard Deviation
- Standard Error
- Confidence Interval
**Significance Tests:**
- t-test - Two-group comparison
- ANOVA - Multi-group comparison
- Wilcoxon test - Non-parametric test
- Bonferroni correction - Multiple comparison correction
Select appropriate statistical tests based on data characteristics.
**Key Principles:**
- Report complete statistical information (mean ± std/SE)
- Specify the test method and significance level used
- Report p-values and effect sizes
- Consider multiple comparison issues
See `references/statistical-methods.md` for the complete statistical methods guide.
### Step 3: Model Performance Comparison
**Comparison Dimensions:**
- Accuracy/Performance metrics
- Training time/Inference speed
- Model complexity/Parameter count
- Robustness/Generalization ability
**Comparison Methods:**
- Baseline comparison - Compare with existing methods
- Ablation study - Validate component contributions
- Cross-dataset validation - Test generalization
Systematically compare performance across different methods, ensuring fair comparison.
### Step 4: Visualization
**Publication-Quality Visualization Requirements:**
- Vector format (PDF/EPS)
- Colorblind-friendly palette
- Clear labels and legends
- Appropriate error bars
- Readable in black-and-white print
**Common Chart Types:**
- Line chart - Training curves, trend analysis
- Bar chart - Performance comparison
- Box plot - Distribution display
- Heatmap - Correlation analysis
- Scatter plot - Relationship display
Use appropriate visualization tools to generate publication-quality figures.
See `references/visualization-best-practices.md` for the visualization guide.
### Step 5: Writing the Results Section
**Results Section Structure:**
```markdown
## Results
### Overview of Main Findings
[1-2 paragraphs summarizing core results]
### Experimental Setup
[Brief description of experimental configuration; details in appendix]
### Performance Comparison
[Comparison with baseline methods, including tables and figures]
### Ablation Study
[Validate contributions of each component]
### Statistical Significance
[Report statistical test results]
### Qualitative Analysis
[Case studies, visualization examples]
```
**Writing Principles:**
- Clearly state the hypothesis each experiment validates
- Guide readers to observe key phenomena: "Figure X shows..."
- Report complete statistical information
- Honestly report limitations
See `references/results-writing-guide.md` for the complete writing guide.
### Step 6: Quality Check
**Checklist:**
- [ ] All values include error bars/confidence intervals
- [ ] Statistical test methods are specified
- [ ] Figures are clear and readable (including black-and-white print)
- [ ] Hyperparameter search ranges are reported
- [ ] Computational resources are specified (GPU type, time)
- [ ] Random seed settings are specified
- [ ] Results are reproducible (code/data available)
## Common Mistakes and Pitfalls
### Statistical Errors
❌ **Wrong approach:**
- Reporting only the best results (cherry-picking)
- Confusing standard deviation and standard error
- Not reporting statistical significance
- Not correcting for multiple comparisons
✅ **Correct approach:**
- Report all experimental results
- Clearly specify whether standard deviation or standard error is used
- Perform appropriate statistical tests
- Use Bonferroni or similar correction methods
### Visualization Errors
❌ **Wrong approach:**
- Using non-colorblind-friendly palettes
- Y-axis not starting from 0 (exaggerating differences)
- Missing error bars
- Overly complex figures
✅ **Correct approach:**
- Use Okabe-Ito or Paul Tol palettes
- Set reasonable axis ranges
- Include error bars and confidence intervals
- Keep figures clean and clear
### Writing Errors
❌ **Wrong approach:**
- Over-interpreting results
- Not describing experimental setup
- Hiding negative results
- Missing statistical information
✅ **Correct approach:**
- Objectively describe observed phenomena
- Provide sufficient experimental details
- Honestly report all results
- Report complete statistical information
See `references/common-pitfalls.md` for the complete error patterns and fixes.
## Integration with Paper Writing
### Collaboration with Writing Skills
This skill focuses on experimental results analysis and works in tandem with the writing skills in this repository:
**`results-analysis` handles:**
- Data analysis and statistical tests
- Visualization generation
- Results interpretation
**`scientific-writing` or `conference-paper-writing` handle:**
- Complete paper structure
- Citation integration
- Venue-specific framing and formatting
**Workflow Integration:**
```
Experiments complete → results-analysis analyzes
↓
Generate analysis report and visualizations
↓
scientific-writing or conference-paper-writing integrates into paper
↓
Complete Results section
```
### Output Format
After analysis, the following are generated:
1. **Analysis Report** (`analysis-report.md`)
- Statistical summary
- Key findings
- Suggested figures
2. **Visualization Files** (`figures/`)
- PDF format figures
- Standalone figure captions
3. **Results Draft** (`results-draft.md`)
- Text ready for direct use in the paper
- Includes figure references
## Examples and Templates
### Example Files
Refer to the `examples/` directory for complete examples:
- **`example-analysis-report.md`** - Complete analysis report example
- **`example-results-section.md`** - Paper Results section example
### Workflow Overview
The complete analysis pipeline includes:
1. **Data Loading** - Read results from experiment output files
2. **Statistical Analysis** - Compute basic statistics and perform significance tests
3. **Visualization** - Create publication-quality figures
4. **Report Generation** - Integrate analysis results and visualizations
See the guides in the `references/` directory for detailed methods and best practices.
## Reference Resources
### Detailed Guides
- **`references/statistical-methods.md`** - Complete statistical methods guide
- **`references/results-writing-guide.md`** - Results section writing standards
- **`references/visualization-best-practices.md`** - Visualization best practices
- **`references/common-pitfalls.md`** - Common errors and fixes
### External Resources
- [Nature Statistics Checklist](https://www.nature.com/documents/nr-reporting-summary-flat.pdf)
- [Science Reproducibility Guidelines](https://www.science.org/content/page/science-journals-editorial-policies)
- [NeurIPS Paper Checklist](https://neurips.cc/Conferences/2025/PaperInformation/PaperChecklist)
## Best Practices Summary
### Data Analysis
✅ **Recommended:**
- Run experiments multiple times (at least 3-5 runs)
- Report complete statistical information
- Use appropriate statistical tests
- Check data completeness
❌ **Prohibited:**
- Cherry-picking best results
- Ignoring statistical significance
- Hiding negative results
- Not reporting experimental setup
### Visualization
✅ **Recommended:**
- Use vector format
- Colorblind-friendly palettes
- Include error bars
- Clear labels
❌ **Prohibited:**
- Raster formats (PNG/JPG)
- Misleading axis scales
- Overly complex figures
- Missing legends
### Writing
✅ **Recommended:**
- Objectively describe results
- Provide sufficient detail
- Honestly report limitations
- Guide reader attention
❌ **Prohibited:**
- Over-interpretation
- Hiding details
- Exaggerating effects
- Vague descriptions
## Summary
This skill provides a systematic experimental results analysis workflow:
1. **Data Loading and Validation** - Ensure data quality
2. **Statistical Analysis** - Perform appropriate statistical tests
3. **Model Comparison** - Systematic performance comparison
4. **Visualization** - Publication-quality figures
5. **Writing** - Results section content
6. **Quality Check** - Ensure reproducibility
Following these principles produces high-quality, reproducible experimental results analysis that meets top conference standards.
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