rebuttal-response
$
npx mdskill add Boom5426/Nature-Paper-Skills/rebuttal-responseGenerate point-by-point rebuttal responses with aligned manuscript edits.
- Transforms reviewer comments into structured author responses and edits.
- Integrates with manuscript editors and revision tracking systems.
- Decides outcomes by classifying comments as clarify, evidence, concede, or disagree.
- Delivers synchronized response letters and concrete text changes to authors.
SKILL.md
.github/skills/rebuttal-responseView on GitHub ↗
--- name: rebuttal-response description: Use when responding to journal or conference reviewer comments and you need a structured author response, aligned manuscript edits, and clear decisions about when to clarify, add evidence, concede, or respectfully disagree. --- # Rebuttal Response ## Overview Use this skill when reviewer comments already exist and the task is no longer generic manuscript revision. The goal is to produce a response package that is credible, efficient, and easy for editors or reviewers to verify. This skill is not for redesigning the whole paper. Use `manuscript-optimizer` first if the manuscript itself is structurally unstable. Use this skill when the paper is in revision mode and each comment must be turned into an explicit response and, where needed, a concrete manuscript change. ## When To Use Use this skill when: - Reviewer comments, decision letters, or revision requests are available - The user needs a point-by-point response letter - The manuscript and response document need to stay synchronized - Some comments should lead to new analyses or text changes, while others should be answered by clarification - The revision requires deciding where to concede and where to push back Do not use this skill for: - Initial manuscript drafting - Submission-preflight QA before any reviewer feedback exists - Generic peer review written from the reviewer side ## Response Principle Every reviewer comment should end in exactly one of these outcomes: - clarified in response only - revised in the manuscript - revised in both manuscript and response - respectfully declined with justification Do not leave a comment in the vague middle ground where the reply sounds polite but the action taken is unclear. ## Triage Categories Classify each comment before writing: - misunderstanding The paper may already contain the answer, but it was not easy enough to find. - clarity problem The intended claim is defensible, but the wording or organization caused confusion. - evidence gap The reviewer is asking for support that is genuinely missing or too weak. - scope mismatch The request is reasonable in general but outside the paper's actual contribution or revision budget. - incorrect premise The reviewer comment is based on a factual or interpretive error. - high-risk criticism The comment challenges novelty, validity, leakage, controls, statistics, or overclaim. Triage first. Only then decide what to change. ## Severity And Readiness Assign each comment a severity: - `minor` presentation, clarity, formatting, citation, or small method-detail issue - `major` evidence, validation, method, statistics, interpretation, or scope issue that may affect editorial confidence - `blocking` ethics, compliance, data integrity, unsupported central claim, or another issue that should not be drafted around - `unclear` insufficient information to judge severity safely Label the package honestly at the end: - `ready_to_submit` - `draft_with_placeholders` - `needs_author_input` - `blocked` ## Response Order 1. Parse all reviewer comments into atomic items. 2. Mark each item by triage category. 3. Decide the action: - clarify - edit text - add analysis - add experiment - narrow claim - decline with justification 4. Update the manuscript first when the response depends on a real change. 5. Write the response letter against the updated manuscript, not against the old draft. 6. Cite exact revised locations whenever possible: - section - figure - table - line or paragraph location if available 7. End with a short revision summary for the editor if the venue expects one. ## Editor-Efficiency Rule Assume the editor is scanning quickly for three things: - whether you agree or disagree with the comment - what concrete revision was made - where that revision can be found Do not write replies that only say the manuscript was revised without specifying the change. ## Decision Rules ### When To Concede Concede when: - the reviewer correctly identifies an evidence gap - a claim is stronger than the data - wording created a reasonable misunderstanding - a control, comparison, or limitation statement is missing Best move: - narrow the claim - add the missing evidence if feasible - explicitly thank the reviewer for improving precision ### When To Clarify Without Major New Work Use clarification when: - the result already exists but was buried - the reviewer missed a definition, setup, or metric explanation - the requested point can be handled by reorganizing text or adding cross-references Best move: - revise the manuscript for discoverability - do not imply that a major scientific flaw was fixed if the issue was presentation ### When To Push Back Push back only when: - the request depends on a false premise - the requested experiment is outside the paper's stated scope - the request would require a different paper rather than a fair revision - the current evidence already answers the concern Best move: - acknowledge the concern as reasonable - explain the boundary precisely - point to the evidence already in the manuscript - avoid defensive tone or rhetorical overreach ## Writing Rules - Quote or paraphrase each reviewer point fairly before responding. - Start with appreciation, then move quickly to substance. - State the action taken in the first 1-2 sentences of the reply. - State explicitly whether you agree, partially agree, or disagree when that is not already obvious from the action taken. - Distinguish clearly between: - what was changed - what was clarified - what was not changed and why - If new text, analysis, or figures were added, say exactly where. - Give page and line numbers whenever the manuscript format makes that possible. - If figure, table, or supplement numbering changed, cite the updated identifiers directly. - If a claim was softened, say so explicitly. - If a request cannot be fully satisfied, explain the scope boundary and give the strongest honest response available. - If the journal allows or expects marked revisions, make sure the changed text is visibly highlighted in the manuscript. ## Comment Taxonomy Classify comments using these buckets before drafting: - editorial or presentation - evidence or interpretation - methodological - statistical - data, code, or materials - citation or positioning - scope or feasibility - ethics or compliance Use the category to choose the response action. For example: - editorial issues usually need text or figure clarification - evidence and statistics issues often need new support, claim-softening, or explicit limitation language - ethics and compliance issues are often `blocking` until the missing facts exist ## Tone Rules Prefer: - respectful - direct - specific - non-defensive - evidence-led Avoid: - over-thanking - vague promises - evasive wording - replying to criticism with hype - claiming to have addressed a concern when only wording changed ## Common Failure Modes - Writing the response letter before deciding the manuscript edits - Thanking the reviewer but never stating the action taken - Saying "revised accordingly" without saying what changed - Claiming a concern is addressed without citing the revised location - Agreeing with contradictory reviewer requests without resolving the conflict - Refusing a request without clearly defining the scope boundary - Using soft language to hide that the paper actually needed a claim downgrade ## Output Standard When using this skill, produce: - a triaged reviewer-comment map - the action chosen for each comment - the revised response text - the linked manuscript change locations - any remaining unresolved issues that still need user judgment - a final readiness label: `ready_to_submit`, `draft_with_placeholders`, `needs_author_input`, or `blocked`
More from Boom5426/Nature-Paper-Skills
- academic-presentations>-
- academic-researcherUse when conducting literature reviews, summarizing papers, comparing methodologies, identifying research gaps, or supporting scholarly writing across disciplines.
- citation-verifierUse when checking manuscript citations, bibliography hygiene, DOI or PMID completeness, placeholder references, or BibTeX consistency before submission or revision.
- conference-paper-writingUse when writing or revising ML or AI conference papers for venues such as NeurIPS, ICML, ICLR, ACL, AAAI, or COLM, especially when the workflow is conference-first rather than Nature-style journal-first.
- data-availabilityUse when drafting, auditing, or revising Data Availability statements, repository plans, accession-number placement, source-data coverage, or restricted-data wording for journal submission or resubmission.
- figure-plannerUse when designing, restructuring, or auditing manuscript figures and you need to define one main claim per figure, assign panel roles, align legends with the text, or decide what belongs in main figures versus supplement.
- manuscript-optimizerUse when reviewing or revising an academic manuscript whose central claim, evidence chain, figures, terminology, and prose may have drifted out of sync before submission or resubmission.
- nature-portfolio-playbookUse when choosing among Nature, Nature Methods, or Nature Biotechnology, or when preparing a Nature Portfolio life-science manuscript for venue fit, article-type framing, and policy-aware pre-submission checks.
- paper-analyzerUse when deeply analyzing a single paper and producing structured notes on claims, methods, figures, evaluation, strengths, limitations, and related work.
- paper-bootstrapUse when starting a new manuscript project or cleaning up an existing paper directory and you need a standard structure, active source files, project memory, and venue defaults before deeper writing begins.